Not all third party batteries. Some require that they use their own charger and they won't charge Fuji OEM batteries in their charger. Personally, I would steer clear of any batteries that cannot be charged in the OEM charger.
If you are in the US, I highly recommend Watson batteries from B&H Photo. Their NP-W126 batteries work every bit as good as the OEM version and they are half the price. I also have a Watson travel charger that I use for both my N-W126 and NP-95 batteries. Watson has interchangeable plates so you can charge more than one type of battery with the same charger. The charger also has a USB charging port so I can use it for my smartphone or to charge my X100T while I'm also charging a battery for my X-E2.
I also hear that Wasabi batteries from Amazon are also as good as the OEM batteries.